The pelagic habitat analysis module for ecosystem‐based fisheries science and management

We have developed a set of tools that operate within an aquatic geographic information system to improve the accessibility, and usability of remote‐sensed satellite and computer‐modeled oceanographic data for marine science and ecosystem‐based management. The tools form the Pelagic Habitat Analysis Module (PHAM), which can be applied as a modeling platform, an investigative aid in scientific research, or utilized as a decision support system for marine ecological management. Applications include fisheries, marine biology, physical and biological oceanography, and marine spatial management. The GIS provides a home for diverse data types and automated tools for downloading remote sensed and global circulation model data. Within the GIS environment, PHAM provides a framework for seamless interactive four‐dimensional visualization, for matching between disparate data types, for flexible statistic or mechanistic model development, and for dynamic application of user developed models for habitat, density, and probability predictions. Here we describe PHAM in the context of ecosystem‐based fisheries management, and present results from case study projects which guided development. In the first, an analysis of the purse seine fishery for tropical tuna in the eastern Pacific Ocean revealed oceanographic drivers of the catch distribution and the influence of climate‐driven circulation patterns on the location of fishing grounds. To support management of the Common Thresher Shark (Alopias vulpinus) in the California Current Ecosystem, a simple empirical habitat utilization model was developed and used to dynamically predict the seasonal range expansion of common thresher shark based on oceanographic conditions.     

Littoral spawning habitats of three southern Arctic charr (Salvelinus alpinus L.) populations

Abstract Arctic charr populations in southern latitudes are nonmigratory, with all life‐stages limited to freshwater lakes and in‐ or out‐flowing tributaries. Although many of these populations are reported to also spawn in lake littorals, little is known about the physical characteristics of putative spawning grounds. A total of 23 discrete spawning sites within three Irish lakes were located by fyke netting of spawning adults and snorkelling in littoral habitats. Spawning sites were found to be long, narrow strips running parallel to the shore at a maximum depth of 124 cm. Spawning sites were limited to areas of coarse mineral substrate with an adequate (c. 8 cm) depth of clean interstitial spaces. In individual lakes, combined areas of spawning sites made up 0.4–0.7% of available littoral. Egg densities varied considerably between sites (33–900·eggs m^?2) and were significantly correlated with gradient and width of spawning sites. No evidence of redd digging was found. The shallow, localised and restricted nature of spawning grounds makes such populations vulnerable to anthropogenically induced postoviposition changes in surface water level, eutrophication processes such as increased lake sedimentation and elevated nutrient status.     

Development and Implementation of a Forest Nursery Accreditation Policy at a Local Level in Leyte, Philippines

Through a series of workshops with the stakeholders including nursery operators, tree farmers, staff of the Department of Environment and Natural Resources, local government units and the academe, a forestry seedling nursery accreditation policy was developed. The resulting policy was subsequently implemented by the municipal government of Palompon, Leyte. The accreditation policy encouraged nursery operators to follow smallholder-based best management practices for tree nurseries. Implementation of the nursery accreditation policy improved farmers’ knowledge and skills in the production of high quality seedlings, encouraged adoption of BMP for forest nurseries, provided additional source of income for the farmers, enabled members of the groups operating the communal nursery to forge closer relationship with each other, encouraged utilization of farmers’ free time in productive activities, developed farmers’ confidence in producing high quality planting materials, and gained for the farmers favourable attention from various organizations and groups. The Bennett’s hierarchy of project outcomes showed that the implementation of accreditation scheme achieved high levels of outcomes, indicating that it led to substantial improvements in the lives of the farmers.     

Genetical control of alkaloid production in Lupinus mutabilis and the effect of a mutant allele Mutal isolated following chemical mutagenesis

Summary A new mutant allele, described here as mutal, which reduces the alkaloid content in dry matter of lupinus mutabilis has been identified following seed treatment with ethyl methane sulphanate. The allele, when homozygous, reduces the alkaloid content from levels of > 2.0 per cent found in seed dry matter of existing populations to 0.2–0.3 per cent and produces plants with vegetative and seed tissues that are organoleptically sweet. Component alkaloids in plants homozygous for mutal differ in respect of the percentage composition of sparteine and of lupanine, as well as possibly of oxa-sparteine and 4-hydroxylupanine, but none is eliminated in genotypes homozygous for the mutant allele. Alkaloid concentration, in so far as not under the control of mutal, has low heritability but lines were isolated following two generations of successive selection which possessed reduced alkaloid levels. These were interpreted to have arisen as a result of recombination of alleles affecting reduction in alkaloid level at several loci. the mutant, mutal, has been established in a pure breeding line which represents a crucial additional step in the evolution of Lupinus mutabilis towards full status as a crop plant.     

Wheat embryogenesis and haploid production in wheat × maize hybrids

Summary Embryogenesis was analyzed in wheat × maize hybrids using paraffin sectioning. Embryogenesis in wheat × maize hybrids is different from that in self-pollinated wheat plants. Development of the embryo is not accompanied by the formation of an endosperm. The endosperm nuclei remain free in the cytoplasm, fail to advance into the cellular stage, and degenerate at a later time. The antipodal cells quickly degenerate in the fertilized ovaries of wheat × maize hybrids similar to self-pollinated ovaries. The antipodal cells remain normal in unpollinated ovaries. The pre-embryo will abort if it is allowed to develop on the plant, because of a nutritional shortage in the absence of an endosperm. Therefore, embryo rescue is necessary for haploid production from a wheat × maize hybrids. Haploid polyembryos were obtained from spikelet culture of wheat × maize hybrids. The formation of polyembryos is due to the cleavage of the pre-embryo and the effect of 2,4-D. The frequency of haploid embryo production and plant regeneration is affected significantly by maize genotypes, but not by wheat genotypes. The concentration of 2,4-D affects only the size of the embryo.     

Variation in digestibility in nine populations of perennial ryegrass (Lolium perenne) and its genetic basis

Summary Thirty five individuals from each of nine perennial ryegrass populations were sampled from set-stocked and zero-grazed swards and from an old permanent pasture. The swards were 6, 18, 30 months and 11 years old when sampled. The permanent pasture was at least 40 years old.Dry matter digestibility (DMD) and organic matter digestibility (OMD) were determined for green leaf material harvested 4 days after ear emergence. Significant differences were found between the populations, but genotypic differences were found only for OMD. The largest proportion of the total variation was due to differences between blocks. In the zero-grazed populations, DMD and OMD declined significantly with increasing sward age. This was not found for the set-stocked swards. Two sets of pair crosses, from which mid-parent, progeny regressions could be determined, were carried out.The regressions of offspring on mid-parent for set-stocked and zero-grazed swards were used to assess the presence of additive genetic variation and to estimate narrow sense heritability of DMD. The coefficients of correlation, 0.122 and 0.226 respectively, were non-significant, indicating an absence of additive genetic variation.     

Relationship between intensity of phosphatase activity and physico-chemical properties in woodland soils

The relationships between intensity of phosphatase activity and soil properties at two depths in some Lake District woodland soils have been examined. Significant relationships were found with soil organic matter, moisture, clay + silt, total nitrogen, isotopically-exchangeable phosphorus, extractable magnesium contents and soil pH. When data from all soils, both 0–5 and 10–15 cm depths, were pooled 66% of the total variation in intensity of phosphatase activity could be accounted for by these soil properties.However, covariance analysis showed that regressions between intensity of phosphatase activity and soil properties differed with soil depth, soil type, season, vegetation type and underlying rock type. When the effects of these interactions were taken into account, up to 99% of the variation in the intensity of phosphatase activity could be accounted for. The relative importance of these interactive factors appeared to be rock type = vegetation type > soil type = season > soil depth.The effects of the soil properties and the interacting factors on the intensity of phosphatase activity in these woodland soils are discussed.     

Magnesium deficiency in Douglas-fir and Grand fir growing on a sandy outwash soil amended with sewage sludge

Soil and plant samples were collected from chlorotic plantations of Grand fir (Abies grandis) and Douglas-fir (Pseudotsuga menziesii) in Winter, 1989. The soils had been amended in 1981 with an average of 300 dry Mg ha^?1 of municipal sewage sludge. The sludge amendment resulted in an N application rate of approximately 8000 kg ha^?1. Foliage analysis indicated a severe Mg deficiency (0.25 g kg^?1 in sludge-treated vs. 0.93 g kg^?1 in untreated area) might be the cause of chlorosis. No other nutrient showed concentrations in the deficient or toxic ranges. Trace metal levels in foliage were elevated significantly for Ni, Cd and Cr in sludge-treated sites, but not toxic levels. Soil samples taken to a depth of 1.4 m indicated the potential for soil acidification (up to 0.9 pH unit) in soil surface horizons. In addition, exchangeable Ca, Mg and K may have been depleted in surface horizons. Exchangeable Al and Fe were greater in the surface of sludge-treated sites. These observations and the loss of much of the nitrogen added during the sludge amendment indicated that nitrification and cation leaching was likely the mechanism for acidification and depletion of exchangeable cations. Fertilization of the plantation with MgSO₄ or dolomitic limestone was carried out in Spring 1990. New foliage collected in June, 1990 was non-chlorotic and significantly higher in Mg concentration than unfertilized foliage (1.1. vs. 0.7 g kg^?1, respectively). Results of this study indicate that it is important to assess the potential for initiating a nutrient deficiency due to secondary effects of sludge application in forest systems.     

Fungal Bioremediation of Creosote-Contaminated Soil: A Laboratory Scale Bioremediation Study Using Indigenous Soil Fungi

The aim of the study is to determine the efficacy of indigenous soil fungi in removing (PAHs) from creosote-contaminated soil with a view to developing a bioremediation strategy for creosote-contaminated soil. Five fungal isolates, Cladosporium, Fusarium, Penicillium, Aspergillus and Pleurotus, were separatelyinoculated onto sterile barley grains and incubated in the dark. Thecolonized barley was inoculated onto creosote-contaminated (250 000 mg kg^?1) soil in 18 duplicate treatments and incubated at 25 °C forseventy days. The soil was amended with nutrient supplements to give a C:N:Pratio of 25:5:1 and tilled weekly. Creosote removal was higher (between 78and 94%) in nutrient supplemented treatments than in the un-supplementedones (between 65 and 88%). A mixed population of fungi was more effective(94.1% in the nutrient amended treatment) in creosote removal than singlepopulations wit a maximum of 88%. Barley supported better fungal growthand PAH removal. Pleurotus sp. removed the creosote more than the other isolates. Two andthree-ring PAHs were more susceptible to removal than the 4- and 5-ringPAHs, which continued to remain in small amounts to the end of thetreatment. Reduction of creosote in the present study was higher than wasobserved in an earlier experiment using a consortium of microorganisms, mainly bacteria, on the same contaminated soil (Atagana, 2003).